PLoS ONE unveiled their new Prokaryotic Genome Collection today, along with an editorial by Section Editor Niyaz Ahmed. Well done, Niyaz! Everyone else: send us your best genome papers!
Tuesday, June 9, 2009
Thursday, April 16, 2009
Our new PLoS ONE paper is out!
Our new paper about detection and inhibition of vaginolysin, the human-specific toxin from Gardnerella vaginalis, came out on line today! [Link] Please check it out and rate/comment if you can!
Friday, March 20, 2009
Papers
I know that this has been widely publicized by Olivia Judson already, but Papers from mekentosj.com has changed my life. It is the most intuitive program I've encountered for organizing pdfs, searching PubMed and autoimporting, and letting me purge paper copies from my office. I've been importing manual and interlibrary loan scans of older papers as well. Amazing. It's $42 after the free trial and worth every penny.
Thursday, February 19, 2009
Top picks in infectious diseases at PLoS ONE
As a followup to the interview with Bora, I got to pick some of my favorite infectious diseases articles from PLoS ONE. http://www.plos.org/cms/node/444
Wednesday, February 18, 2009
PLoS ONE interview
An interview that I did with Bora at PLoS ONE is now available at the PLoS site. We talked about infectious diseases, open access, and social justice. I also got to use the term "tyranny of the Impact Factor," which was fun...
Thursday, September 18, 2008
NIH Open Access Mandate Under Attack
Here is a message from PLoS that was posted today. Legislation has been introduced that would effectively end the mandatory deposition of manuscripts reporting NIH-funded research into the freely available PubMed Central archive. Please contact your representatives and urge them to oppose this legislation and to preserve access to taxpayer-funded research. Thank you.
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NIH Mandate under attack - we need your help by 9.24
A rare individual note from us today but it is in a good cause. We don't like to bug our fans too much but sometimes we need your assistance.
We need you to make a noise for OA by contacting your representatives and senators to protest a new bill introduced into congress that would effectively reverse the NIH Public Access Policy. There's an especially nice post from David Dooling at PolITigenomics on the topic here http://www.politigenomics.
The last time we asked our Facebook fans to take action in support of the mandate, you guys did such a good job that we were asked by certain folks who shall remain nameless to "call off the dogs" because they "had the point already"! Now we need to ask you to act again.
So what's the story? On September 11, 2008, the Chairman of the House Judiciary Committee (Rep. John Conyers, D-MI) introduced a bill that would effectively reverse the NIH Public Access Policy, as well as make it impossible for other federal agencies to put similar policies into place.
The legislation is HR6845: “Fair Copyright in Research Works Act” http://judiciary.house.gov
Please contact your Representative and Senators no later than September 24, 2008 to express your support for public access to taxpayer-funded research and ask that he or she OPPOSE HR6845.
Especially important are members of the House Judiciary Committee http://judiciary.house.gov
Draft text and contact details are included below.
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Dear [Representative/Senator];
On behalf of [your organization], I strongly urge you to OPPOSE HR 6845, the Fair Copyright in Research Works Act, introduced to the House Judiciary Committee, Subcommittee on the Courts, Intellectual Property and the Internet, on September 11, 2008. This bill would reverse the National Institutes of Health (NIH) Public Access Policy, prohibit American taxpayers from accessing any and all research funded by taxpayer dollars, and stifle critical advancements in lifesaving research and scientific discovery.
Because of the NIH Public Access Policy, millions of Americans now have access to vital health care information from the NIH’s PubMed Central database. Under the current policy, nearly 4,000 new crucial biomedical articles were deposited in the last month alone. HR6845 would prohibit the deposit of these articles so that, as a result, researchers, physicians, health care professionals, families and individuals will be seriously impeded in their ability to access NIH-funded, critical health-related information.
[Why you support taxpayer access and the NIH policy]. The NIH policy must be allowed to continue to ensure public access to the results of research funded by the agency with taxpayer dollars. Please OPPOSE HR6845.
Sincerely,
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CONTACT INFORMATION
SENATE COMMITTEE ON THE JUDICIARY
name state fax
Senator Patrick Leahy VT 202-224-3479 (Chairman)
Senator Arlen Specter PA 202-228-1229 (Ranking Member)
Senator Jeff Sessions AL 202-224-3149
Senator Jon Kyl AZ 202-224-2207
Senator Dianne Feinstein CA 202-228-3954
Senator Joseph Biden DE 202-224-0139
Senator Charles Grassley IA 202-224-6020
Senator Richard Durbin IL 202-228-0400
Senator Sam Brownback KS 202-228-1265
Senator Edward M. Kennedy MA 202-224-2417
Senator Benjamin Cardin MD 202-224-1651
Senator Charles Schumer NY 202-228-3027
Senator Tom Coburn OK 202-224-6008
Senator Sheldon Whitehouse RI 202-228-6362
Senator Lindsey Graham SC 202-224-3808
Senator John Cornyn TX 202-228-2856
Senator Orrin Hatch UT 202-224-6331
Senator Herb Kohl WI 202-224-9787
Senator Russell Feingold WI 202-224-2725
HOUSE COMMITTEE ON THE JUDICIARY
name state fax
Rep. John Conyers, Jr. TX 202-225-0072 (Chairman)
Rep. Lamar Smith TX 202-225-8628 (Ranking Member)
Rep. Artur Davis AL 202-226-9567
Rep. Trent Franks AZ 202-225-6328
Rep. Howard Berman CA 202-225-3196
Rep. Zoe Lofgren CA 202-225-3336
Rep. Maxine Waters CA 202-225-7854
Rep. Linda T. Sanchez CA 202-226-1012
Rep. Brad Sherman CA 202-225-5879
Rep. Adam Schiff CA 202-225-5828
Rep. Elton Gallegly CA 202-225-1100
Rep. Dan Lungren CA 202-226-1298
Rep. Darrell Issa CA 202-225-3303
Rep. Robert Wexler FL 202-225-5974
Rep. Debbie Wasserman Schultz FL 202-226-2052
Rep. Ric Keller FL 202-225-0999
Rep. Tom Feeney FL 202-226-6299
Rep. Hank Johnson GA 202-226-0691
Rep. Steve King IA 202-225-3193
Rep. Luis Gutierrez IL 202-225-7810
Rep. Mike Pence IN 202-225-3382
Rep. William D. Delahunt MA 202-225-5658
Rep. Keith Ellison MN 202-225-4886
Rep. Melvin Watt NC 202-225-1512
Rep. Howard Coble NC 202-225-8611
Rep. Jerrold Nadler NY 202-225-6923
Rep. Anthony Weiner NY 202-226-7253
Rep. Betty Sutton OH 202-225-2266
Rep. Steve Chabot OH 202-225-3012
Rep. Jim Jordan OH 202-226-0577
Rep. Steve Cohen TN 202-225-5663
Rep. Sheila Jackson Lee TX 202-225-3317
Rep. Louie Gohmert TX 202-226-1230
Rep. Chris Cannon UT 202-225-5629
Rep. Rick Boucher VA 202-225-0442
Rep. Robert Scott VA 202-225-8354
Rep. Bob Goodlatte VA 202-225-9681
Rep. J. Randy Forbes VA 202-226-1170
Rep. Tammy Baldwin WI 202-225-6942
Rep. F. James Sensenbrenner, Jr. WI 202-225-3190
Thank you so much for everything you do to support us. Let's stop the madness.
Best wishes
PLoS
Friday, August 15, 2008
For profit, closed-access publishing
An excellent post on for-profit publishers over at The Questionable Authority.
Wednesday, June 18, 2008
PLoS ONE
I recently became the Section Editor for Infectious Diseases at PLoS ONE. While I've been an academic editor there since pretty close to the beginning, I'm really excited to take on this new role. Infectious diseases is already one of the largest article categories at PLoS ONE, and as a medical and scientific field with truly global reach, it is one that can benefit most from the open access model of publishing. I'm still getting the feel of my new role, but soon I hope to start collecting advice from friends and colleagues to help me grow the profile of PLoS ONE as a place where people submit and publish the best infectious diseases research.
Tuesday, April 8, 2008
A good day for open access
The NIH public access mandate goes into effect today. Jonathan Eisen has a good post about this (and, more specifically, about the role of the Public Library of Science in making this happen) at The Tree of Life. Importantly, a growing number of journals are making compliance with the NIH mandate automatic, and those that have not yet will be under increasing pressure to do so as we go forward.
Saturday, April 5, 2008
JBC offers an open access option
In a welcome move, the Journal of Biological Chemistry has announced that in addition to their free-access papers in press feature, they will now allow authors to elect (for a fee) an "Author's Choice Publication Option." Essentially this allows authors to have their work immediately available under a Creative Commons Attribution Non-Commercial license (not quite as open as the PLoS Journals, but certainly not bad). It appears in their instructions to authors that copyright is still transferred to ASBMB for all manuscripts, though.
I've published some of the work that I am most proud of in JBC, and it is great to see them making open access an option for authors.
Wednesday, March 12, 2008
NIH Public Access Policy -- Public Comments Needed
The following is an email that went out to the PLoS ONE Editorial Board today. Please do consider contacting NIH in support of the Public Access Policy and against the attempts to further delay its implementation. Thanks.
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Dear Editorial and Advisory Board Members,
Apologies for sending this email round to everyone as this policy mostly applies to people in the USA, especially people funded by the NIH. However, anyone is free to comment.
As I am sure many of you know, the US congress recently passed a bill to require public access to NIH funded research. A summary of developments is here http://www.plos.org/cms/node/308.
The deadline for the implementation of the NIH Public Access Policy (4/7/08) is fast approaching and some traditional publishers are trying to delay this important step.
The NIH seeks your input immediately.
To fully understand the scientific and taxpayer community perspective of this important initiative, the NIH urges you to add comments at this website http://publicaccess.nih.gov/comments/comments.htm
by Monday 3/17 5pm EDT.
Please comment in your own words – however, you may find the following ideas useful in framing a response.
The proposed NIH policy:
Positively contributes to the advancement of science
Serves the public health—by enabling discovery, speeding treatment, and cures
Provides a direct return for public investment in the NIH
Keeps the USA in step with other countries who have recently enacted similar polices
Democratizes teaching and learning—by providing new resources for scientists to use in new and innovative ways.
If you have questions about the policy and how it affects you, you should ask these questions on the website, but we’d encourage you to preface them with a statement of support (it would be a shame if such questions were misinterpreted as a lack of support for the policy).
These comments will be considered alongside verbal presentations at the Open Meeting on Public Access on 3/20 (you may also register here http://publicaccess.nih.gov/comments/registration.htm to attend this meeting by Monday 3/17 5pm EDT).
Thank you, in advance, for letting the NIH know that you and your community supports this policy.
Please do feel free to forward this message along to U.S. colleagues, friends, and family members, as this policy affects researchers, patients, and the taxpaying public.
Best wishes,
Mark
Mark Patterson
Director of Publishing
Public Library of Science
European Office:
7 Portugal Place
Cambridge
CB5 8AF, UK
t: +44 (0)1223 463331
e: mpatterson@plos.org
w: www.plos.org
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